# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "aniMotum" in publications use:'
type: software
license: MIT
title: 'aniMotum: Fit Continuous-Time State-Space and Latent Variable Models for Quality
  Control of Argos Satellite (and Other) Telemetry Data and for Estimating Changes
  in Animal Movement'
version: 1.2-06
doi: 10.1111/2041-210X.14060
identifiers:
- type: doi
  value: 10.32614/CRAN.package.aniMotum
- type: url
  value: https://ianjonsen.github.io/aniMotum/
abstract: 'Fits continuous-time random walk, correlated random walk and move persistence
  state-space models for location estimation and behavioural inference from animal
  tracking data (''Argos'', processed light-level ''geolocation'', ''GPS''). Template
  Model Builder (''TMB'') is used for fast random-effects estimation. The ''Argos''
  data can be: (older) least squares-based locations; (newer) Kalman filter-based
  locations with error ellipse information; or a mixture of both. The models estimate
  two sets of location states corresponding to: 1) each observation, which are (usually)
  irregularly timed; and 2) user-specified time intervals (regular or irregular).
  A track re-routing function is provided to adjust location estimates for known movement
  barriers. Track simulation functions are provided. Latent variable models are also
  provided to estimate move persistence from track data not requiring state-space
  model filtering.'
authors:
- family-names: Jonsen
  given-names: Ian
  email: jonsen@stochastic-qc.org
- family-names: Grecian
  given-names: W. James
  email: james.grecian@gmail.com
- family-names: Patterson
  given-names: Toby
  email: toby.patterson@csiro.au
preferred-citation:
  type: article
  title: 'aniMotum, an R package for animal movement data: Rapid quality control,
    behavioural estimation and simulation'
  authors:
  - family-names: Jonsen
    given-names: Ian D.
  - family-names: Grecian
    given-names: W. James
    email: james.grecian@gmail.com
  - family-names: Phillips
    given-names: Lachlan
  - family-names: Carroll
    given-names: Gemma
  - family-names: McMahon
    given-names: Clive R.
  - family-names: Harcourt
    given-names: Robert G.
  - family-names: Hindell
    given-names: Mark A.
  - family-names: Patterson
    given-names: Toby A.
  journal: Methods in Ecology and Evolution
  year: '2023'
  doi: 10.1111/2041-210X.14060
repository: https://ocean-tracking-network.r-universe.dev
repository-code: https://github.com/ianjonsen/aniMotum/issues/
commit: e599da1808198a0fb82f4f6b5cfd817fce3b3482
url: https://github.com/ianjonsen/aniMotum/
date-released: '2024-07-02'
contact:
- family-names: Jonsen
  given-names: Ian
  email: jonsen@stochastic-qc.org
references:
- type: article
  title: A continuous-time state-space model for rapid quality-control of Argos locations
    from animal-borne tags
  authors:
  - family-names: Jonsen
    given-names: Ian D.
  - family-names: Patterson
    given-names: Toby A.
  - family-names: Costa
    given-names: Daniel P.
  - family-names: Doherty
    given-names: Philip D.
  - family-names: Godley
    given-names: Brendan J.
  - family-names: Grecian
    given-names: W. James
  - family-names: Guinet
    given-names: Christophe
  - family-names: Hoenner
    given-names: Xavier
  - family-names: Kienle
    given-names: Sarah S.
  - family-names: Robinson
    given-names: Patrick W.
  - family-names: Votier
    given-names: Stephen C.
  - family-names: Whiting
    given-names: Scott
  - family-names: Witt
    given-names: Matthew J.
  - family-names: Hindell
    given-names: Mark A.
  - family-names: Harcourt
    given-names: Robert G.
  - family-names: McMahon
    given-names: Clive R.
  journal: Movement Ecology
  year: '2020'
  volume: '8'
  start: '31'
- type: generic
  title: fit latent variable movement models to animal tracking data for location
    quality control and behavioural inference
  authors:
  - family-names: Jonsen
    given-names: Ian D.
  - family-names: Patterson
    given-names: Toby A.
  year: '2020'
  doi: 10.5281/zenodo.3899972
  url: https://zenodo.org/record/2628481#.YnUcwy_b1qs