{
  "_id": "6a20a794cd65a98ecbd18bdd",
  "Package": "RSP",
  "Title": "Refined Shortest Paths",
  "Version": "2.0.0",
  "Authors@R": "c(\nperson(\"Yuri\", \"Niella\", role = c(\"aut\", \"cre\"), email = \"yuri.niella@gmail.com\", comment = c(ORCID = \"0000-0003-1878-6091\")),\nperson(\"Hugo\", \"Flávio\", role = c(\"aut\"), email = \"hflavio@dal.ca\", comment = c(ORCID = \"0000-0002-5174-1197\"))\n)",
  "Description": "The RSP toolkit is a method for analysing the fine scale\nmovements of aquatic animals tracked with passive acoustic\ntelemetry in estuarine environments, that accounts for the\nsurrounding land masses. The animal movements between\ndetections are recreated to have occurred exclusively in water\nand the utilisation distribution areas are limited by the land\ncontours, providing realistic estimations of space use.",
  "License": "GPL-3 + file LICENSE",
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  "VignetteBuilder": "knitr",
  "URL": "https://github.com/YuriNiella/RSP",
  "BugReports": "https://github.com/YuriNiella/RSP/issues",
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  "Repository": "https://ocean-tracking-network.r-universe.dev",
  "Date/Publication": "2025-11-25 00:07:12 UTC",
  "RemoteUrl": "https://github.com/yuriniella/RSP",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 22:06:34 UTC",
    "User": "root"
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  "Author": "Yuri Niella [aut, cre] (ORCID: <https://orcid.org/0000-0003-1878-6091>),\nHugo Flávio [aut] (ORCID: <https://orcid.org/0000-0002-5174-1197>)",
  "Maintainer": "Yuri Niella <yuri.niella@gmail.com>",
  "MD5sum": "52816b45fcb1cbf51fa4a1b8ee39ac03",
  "_user": "ocean-tracking-network",
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  "_published": "2026-06-03T22:15:48.076Z",
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    "message": "Update\n\nUpdate runRSP to fix bug with tag.recipient object\n",
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      "version": ">= 4.0",
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    "type": "organization",
    "name": "Ocean Tracking Network",
    "description": "The Ocean Tracking Network (OTN) is a global aquatic research, data management and partnership platform"
  },
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    "extra/citation.json",
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  "_exports": [
    "%>%",
    "addCentroids",
    "addRecaptures",
    "addStations",
    "animateTracks",
    "convertIMOS",
    "dynBBMM",
    "getAreas",
    "getAreaStep",
    "getCentroids",
    "getDistances",
    "getDistPoint",
    "getOverlaps",
    "plotAreas",
    "plotContours",
    "plotDensities",
    "plotDistances",
    "plotOverlaps",
    "plotRaster",
    "plotTracks",
    "runRSP",
    "suggestSize"
  ],
  "_datasets": [
    {
      "name": "input.example",
      "title": "Example acoustic data filtered with actel",
      "object": "input.example",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "addCentroids",
      "title": "Add group centroid location to an existing plot",
      "topics": [
        "addCentroids"
      ]
    },
    {
      "page": "addRecaptures",
      "title": "Add recapture locations to an existing plot",
      "topics": [
        "addRecaptures"
      ]
    },
    {
      "page": "addStations",
      "title": "Add receiver stations to an existing plot",
      "topics": [
        "addStations"
      ]
    },
    {
      "page": "animateTracks",
      "title": "Animate the RSP tracks",
      "topics": [
        "animateTracks"
      ]
    },
    {
      "page": "calcRSP",
      "title": "Recreating RSP for a particular tracked animal",
      "topics": [
        "calcRSP"
      ]
    },
    {
      "page": "convertIMOS",
      "title": "Convert IMOS files to be analysed with RSP",
      "topics": [
        "convertIMOS"
      ]
    },
    {
      "page": "dynBBMM",
      "title": "Total dynamic Brownian Bridge Movement Model",
      "topics": [
        "dynBBMM"
      ]
    },
    {
      "page": "getAreas",
      "title": "Calculate water areas per group or track",
      "topics": [
        "getAreas"
      ]
    },
    {
      "page": "getAreaStep",
      "title": "Calculate dBBMM and overlapping areas in steps",
      "topics": [
        "getAreaStep"
      ]
    },
    {
      "page": "getCentroids",
      "title": "Get centroid locations of dBBMM",
      "topics": [
        "getCentroids"
      ]
    },
    {
      "page": "getDistances",
      "title": "Get total distances travelled",
      "topics": [
        "getDistances"
      ]
    },
    {
      "page": "getDistPoint",
      "title": "Calculate in-water distances from RSP locations to a point of reference",
      "topics": [
        "getDistPoint"
      ]
    },
    {
      "page": "getOverlaps",
      "title": "Calculate overlaps between different groups",
      "topics": [
        "getOverlaps"
      ]
    },
    {
      "page": "includeRSP",
      "title": "Recreating RSP for all tracked animals",
      "topics": [
        "includeRSP"
      ]
    },
    {
      "page": "nameTracks",
      "title": "Identify potential fine-scale data for analysis",
      "topics": [
        "nameTracks"
      ]
    },
    {
      "page": "plotAreas",
      "title": "Plot areas",
      "topics": [
        "plotAreas"
      ]
    },
    {
      "page": "plotContours",
      "title": "Plot dynamic Brownian Bridge Movement Model (dBBMM) contours",
      "topics": [
        "plotContours"
      ]
    },
    {
      "page": "plotDensities",
      "title": "Density plot of elapsed times between consecutive acoustic detections",
      "topics": [
        "plotDensities"
      ]
    },
    {
      "page": "plotDistances",
      "title": "Plot total distances travelled",
      "topics": [
        "plotDistances"
      ]
    },
    {
      "page": "plotOverlaps",
      "title": "Plot overlapping contours",
      "topics": [
        "plotOverlaps"
      ]
    },
    {
      "page": "plotRaster",
      "title": "Check input data quality for the RSP analysis",
      "topics": [
        "plotRaster"
      ]
    },
    {
      "page": "plotTracks",
      "title": "Plot the RSP tracks",
      "topics": [
        "plotTracks"
      ]
    },
    {
      "page": "prepareDetections",
      "title": "Prepare detection data for RSP calculations",
      "topics": [
        "prepareDetections"
      ]
    },
    {
      "page": "runRSP",
      "title": "Calculate refined shortest paths between detections",
      "topics": [
        "runRSP"
      ]
    },
    {
      "page": "suggestSize",
      "title": "Suggest plot dimensions for a given raster",
      "topics": [
        "suggestSize"
      ]
    }
  ],
  "_readme": "https://github.com/yuriniella/RSP/raw/HEAD/README.md",
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  "_vignettes": [
    {
      "source": "a-1_Preparing_the_data.Rmd",
      "filename": "a-1_Preparing_the_data.html",
      "title": "Preparing the data ",
      "author": "Yuri Niella & Hugo Flávio",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Index",
        "Before we start",
        "1.1. Preliminary analysis of acoustic detections using actel",
        "1.2. Using IMOS data in your analyses",
        "1.3. Preparing the data from your study area using actel",
        "1.4. Checking the quality of the input files"
      ],
      "created": "2020-06-05 03:43:24",
      "modified": "2025-05-26 04:12:24",
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    },
    {
      "source": "a-3_dBBMM.Rmd",
      "filename": "a-3_dBBMM.html",
      "title": "Calculating utilization distribution ",
      "author": "Yuri Niella & Hugo Flávio",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Index",
        "3.1. Total dynamic Brownian Bridge Movement Model (group dBBMM)",
        "3.2. Fine-scale dynamic Brownian Bridge Movement Model (timeslot dBBMM)",
        "3.3. Calculating areas of space use",
        "3.3.1. Group areas",
        "3.3.2. Track areas"
      ],
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      "modified": "2022-08-24 17:34:18",
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      "filename": "a-2_Refining_Shortest_paths.html",
      "title": "Refining the Shortest Paths in-water ",
      "author": "Yuri Niella & Hugo Flávio",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Index",
        "2.1. Exploring the runRSP results",
        "2.2. Visualizing the runRSP outputs",
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      ],
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    {
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        "4.1. Calculating overlaps for group dBBMM",
        "4.2. Calculating overlaps for timeslot dBBMM",
        "4.2.1. Obtain overlap data from timeslot dBBMM for applying further statistical analysis",
        "The end"
      ],
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        "5.1. Calculating dBBMM areas and overlaps between pairs of groups in time steps"
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      "modified": "2022-08-24 17:34:18",
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