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    "boutinit",
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    "bouts3.nls",
    "bouts3.nlsFUN",
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    "calibrateSpeed",
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    "createTDR",
    "depth<-",
    "distSpeed",
    "diveStats",
    "extractDive",
    "fitMLEbouts",
    "fitNLSbouts",
    "getCCData",
    "getDAct",
    "getDepth",
    "getDiveDeriv",
    "getDiveModel",
    "getDPhaseLab",
    "getDtime",
    "getFileName",
    "getGAct",
    "getSpeed",
    "getSpeedCoef",
    "getTDR",
    "getTime",
    "grpSpeedFilter",
    "labelBouts",
    "logit",
    "oneDiveStats",
    "plotBouts",
    "plotBoutsCDF",
    "plotDiveModel",
    "plotTDR",
    "plotZOC",
    "readLocs",
    "readTDR",
    "rmixexp",
    "rmsDistFilter",
    "rqPlot",
    "show",
    "speed<-",
    "stampDive",
    "timeBudget",
    "unLogit"
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      "file": "dives.csv",
      "class": [
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      ],
      "fields": [
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        "time",
        "depth",
        "light",
        "temperature",
        "speed"
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      "rows": 34199,
      "table": true,
      "tojson": true
    },
    {
      "name": "divesTDR",
      "title": "Sample of TDR data from a fur seal",
      "object": "divesTDR",
      "file": "divesTDR.RData",
      "class": [
        "TDRspeed"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "divesTDRzoc",
      "title": "Sample of TDR data from a fur seal",
      "object": "divesTDRzoc",
      "file": "divesTDRzoc.RData",
      "class": [
        "TDRspeed"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sealLocs",
      "title": "Ringed and Gray Seal ARGOS Satellite Location Data",
      "object": "sealLocs",
      "file": "sealLocs.csv",
      "class": [
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      ],
      "fields": [
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        "time",
        "class",
        "lon",
        "lat"
      ],
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      "table": true,
      "tojson": true
    }
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  "_help": [
    {
      "page": "diveMove-package",
      "title": "Dive Analysis and Calibration",
      "concept": [
        "time depth recorder",
        "Dive analysis"
      ],
      "topics": [
        "diveMove-package",
        "diveMove"
      ]
    },
    {
      "page": "dot-runquantile",
      "title": "Quantile of Moving Window",
      "concept": [
        "moving max",
        "moving maximum",
        "moving min",
        "moving minimum",
        "moving percentile",
        "moving quantile",
        "moving window",
        "rolling max",
        "rolling maximum",
        "rolling min",
        "rolling minimum",
        "rolling percentile",
        "rolling quantile",
        "rolling window",
        "running max",
        "running maximum",
        "running min",
        "running minimum",
        "running percentile",
        "running quantile",
        "running window"
      ],
      "topics": [
        ".runquantile"
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    },
    {
      "page": "austFilter",
      "title": "Filter satellite locations",
      "topics": [
        "austFilter",
        "grpSpeedFilter",
        "rmsDistFilter"
      ]
    },
    {
      "page": "boutsBEC",
      "title": "Calculate bout ending criteria from model coefficients",
      "topics": [
        "bec",
        "bec,mle-method",
        "bec,nls-method"
      ]
    },
    {
      "page": "boutfreqs",
      "title": "Histogram of log-transformed frequencies",
      "topics": [
        "boutfreqs"
      ]
    },
    {
      "page": "boutinit",
      "title": "Fit \"broken stick\" model to log frequency data for identification of bouts of behaviour",
      "topics": [
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        "boutinit,Bouts-method",
        "boutinit,data.frame-method"
      ]
    },
    {
      "page": "Bouts-class",
      "title": "Class \"Bouts\" for representing Poisson mixtures for identification of behavioural bouts",
      "topics": [
        "Bouts",
        "Bouts-class"
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    },
    {
      "page": "boutsCDF",
      "title": "Estimated cumulative frequency for two- or three-process Poisson mixture models",
      "topics": [
        "boutsCDF"
      ]
    },
    {
      "page": "boutsNLSll",
      "title": "Generalized log likelihood function taking any number of Poisson processes in a \"broken-stick\" model",
      "topics": [
        "boutsNLSll",
        "boutsNLSll,Bouts-method",
        "boutsNLSll,numeric-method"
      ]
    },
    {
      "page": "calibrateDepth",
      "title": "Calibrate Depth and Generate a \"TDRcalibrate\" object",
      "topics": [
        "calibrateDepth"
      ]
    },
    {
      "page": "calibrateSpeed",
      "title": "Calibrate and build a \"TDRcalibrate\" object",
      "topics": [
        "calibrateSpeed"
      ]
    },
    {
      "page": "createTDR",
      "title": "Read comma-delimited file with \"TDR\" data",
      "topics": [
        "createTDR",
        "readTDR"
      ]
    },
    {
      "page": "distSpeed",
      "title": "Calculate distance and speed between locations",
      "topics": [
        "distSpeed"
      ]
    },
    {
      "page": "diveModel-class",
      "title": "Class \"diveModel\" for representing a model for identifying dive phases",
      "topics": [
        "diveModel",
        "diveModel-class"
      ]
    },
    {
      "page": "dives",
      "title": "Sample of TDR data from a fur seal",
      "topics": [
        "dives",
        "divesTDR",
        "divesTDRzoc"
      ]
    },
    {
      "page": "diveStats",
      "title": "Per-dive statistics",
      "topics": [
        "diveStats",
        "oneDiveStats",
        "stampDive"
      ]
    },
    {
      "page": "extractDive",
      "title": "Extract Dives from \"TDR\" or \"TDRcalibrate\" Objects",
      "topics": [
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      "source": "diveMove.Rmd",
      "filename": "diveMove.html",
      "title": "Diving Behaviour Analysis in R",
      "author": "Sebastián P. Luque",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Features",
        "Preliminary Procedures",
        "Data Preparation",
        "TDR Data Representation",
        "Identification of Activities at Various Scales",
        "Calibrated TDR Data Representation",
        "Dive Summaries",
        "Calibrating Speed Sensor Readings",
        "Bout Detection",
        "Summary",
        "Acknowledgements",
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      "modified": "2021-02-22 20:28:24",
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