{ "_id": "6a250e704b233be198388dda", "Package": "mort", "Title": "Identifying Potential Mortalities and Expelled Tags in Aquatic\nAcoustic Telemetry Arrays", "Version": "0.0.1", "Authors@R": "c(\nperson(\"Rosie\", \"Smith\", , \"rosieluain@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-2675-4452\")),\nperson(\"Heidi\", \"Swanson\", role = \"fnd\")\n)", "Description": "A toolkit for identifying potential mortalities and\nexpelled tags in aquatic acoustic telemetry arrays. Designed\nfor arrays with non-overlapping receivers.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "URL": "https://github.com/rosieluain/mort,\nhttps://rosieluain.github.io/mort/", "BugReports": "https://github.com/rosieluain/mort/issues", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "LazyData": "true", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Repository": "https://ocean-tracking-network.r-universe.dev", "Date/Publication": "2026-05-08 15:51:41 UTC", "RemoteUrl": "https://github.com/rosieluain/mort", "RemoteRef": "HEAD", "RemoteSha": "20bcaf985c59faf0ba598b3de6381836e8169519", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-07 06:20:30 UTC", "User": "root" }, "Author": "Rosie Smith [aut, cre, cph] (ORCID:\n),\nHeidi Swanson [fnd]", "Maintainer": "Rosie Smith ", "MD5sum": "5d5dee57d291d8be228783be06d1e448", "_user": "ocean-tracking-network", "_type": "src", "_file": "mort_0.0.1.tar.gz", "_fileid": "4f62e512f27b587d22dcdfdccc9df250880a06d9794c8aa03704b23e68361852", "_filesize": 3047792, "_sha256": "4f62e512f27b587d22dcdfdccc9df250880a06d9794c8aa03704b23e68361852", "_created": "2026-06-07T06:20:30.000Z", "_published": "2026-06-07T10:47:45.298Z", "_distro": "noble", "_jobs": [ { "job": 79937018211, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7461415267" }, { "job": 79937018196, "time": 158, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461416672" }, { "job": 79937018198, "time": 108, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7461410808" }, { "job": 79937018190, "time": 96, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461409554" }, { "job": 79936745028, "time": 291, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7461397565" }, { "job": 79937018200, "time": 113, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7461411500" }, { "job": 79937018202, "time": 106, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7461410560" }, { "job": 79937018206, "time": 116, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7461411694" }, { "job": 79937018209, "time": 110, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7461411066" } ], "_buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rosieluain/mort", "_commit": { "id": "20bcaf985c59faf0ba598b3de6381836e8169519", "author": "rosieluain ", "committer": "rosieluain ", "message": "Fixed error in residences\n", "time": 1778255501 }, "_maintainer": { "name": "Rosie Smith", "email": "rosieluain@gmail.com", "login": "rosieluain", "description": "", "uuid": 43728187, "orcid": "0000-0003-2675-4452" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "lubridate", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "plotly", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "rosieluain", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 2 } ], "_tags": [], "_topics": [ "acoustic-telemetry", "aquatic", "mortality-estimation" ], "_stars": 4, "_contributors": [ { "user": "rosieluain", "count": 67, "uuid": 43728187 } ], "_userbio": { "uuid": 47894657, "type": "organization", "name": "Ocean Tracking Network", "description": "The Ocean Tracking Network (OTN) is a global aquatic research, data management and partnership platform" }, "_downloads": { "count": 147, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mort" }, "_devurl": "https://github.com/rosieluain/mort", "_pkgdown": "https://rosieluain.github.io/mort/", "_searchresults": 23, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mort.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/rosieluain/mort", "_realowner": "rosieluain", "_cranurl": true, "_releases": [ { "version": "0.0.1", "date": "2023-09-04" } ], "_exports": [ "backwards", "drift", "infrequent", "morts", "mortsplot", "residences", "resmax", "resmaxcml", "review", "season", "stationchange" ], "_datasets": [ { "name": "ddd", "title": "Sample dead drift direction dataframe", "object": "ddd", "class": [ "data.frame" ], "fields": [ "From", "To" ], "rows": 18, "table": true, "tojson": true }, { "name": "detections", "title": "Sample acoustic telemetry detection data", "object": "detections", "class": [ "data.frame" ], "fields": [ "DateTimeUTC", "Station.Name", "ID" ], "rows": 447627, "table": true, "tojson": true }, { "name": "events", "title": "Sample residence events", "object": "events", "class": [ "data.frame" ], "fields": [ "ResidenceStart", "Station.Name", "ID", "ResidenceEnd", "ResidenceLength.days" ], "rows": 11487, "table": true, "tojson": true }, { "name": "new.data", "title": "Example of new acoustic telemetry detection data", "object": "new.data", "class": [ "data.frame" ], "fields": [ "ResidenceStart", "Station.Name", "ID", "ResidenceEnd", "ResidenceLength.days" ], "rows": 2, "table": true, "tojson": true }, { "name": "seasons", "title": "Ice-free seasons", "object": "seasons", "class": [ "data.frame" ], "fields": [ "Start", "End" ], "rows": 5, "table": true, "tojson": true } ], "_help": [ { "page": "backwards", "title": "Shift start time of potential mortalities earlier", "topics": [ "backwards" ] }, { "page": "ddd", "title": "Sample dead drift direction dataframe", "topics": [ "ddd" ] }, { "page": "detections", "title": "Sample acoustic telemetry detection data", "topics": [ "detections" ] }, { "page": "drift", "title": "Dead and drifting", "topics": [ "drift" ] }, { "page": "events", "title": "Sample residence events", "topics": [ "events" ] }, { "page": "infrequent", "title": "Identify potential mortalities from infrequent detections", "topics": [ "infrequent" ] }, { "page": "morts", "title": "Identify potential mortalities or expelled tags", "topics": [ "morts" ] }, { "page": "mortsplot", "title": "Plot residence events", "topics": [ "mortsplot" ] }, { "page": "new.data", "title": "Example of new acoustic telemetry detection data", "topics": [ "new.data" ] }, { "page": "residences", "title": "Generate residence events", "topics": [ "residences" ] }, { "page": "resmax", "title": "Maximum residence duration", "topics": [ "resmax" ] }, { "page": "resmaxcml", "title": "Maximum cumulative residence duration", "topics": [ "resmaxcml" ] }, { "page": "review", "title": "Review previously identified mortalities using new data", "topics": [ "review" ] }, { "page": "season", "title": "Select residence events from specified seasons", "topics": [ "season" ] }, { "page": "seasons", "title": "Ice-free seasons", "topics": [ "seasons" ] }, { "page": "stationchange", "title": "Identify most recent station change", "topics": [ "stationchange" ] } ], "_pkglogo": "https://github.com/rosieluain/mort/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/rosieluain/mort/raw/HEAD/README.md", "_rundeps": [ "cpp11", "generics", "lubridate", "rlang", "timechange" ], "_vignettes": [ { "source": "a3_drift.Rmd", "filename": "a3_drift.html", "title": "Dead and drifting", "engine": "knitr::rmarkdown", "headings": [ "Specifying drift stations", "Applying drift", "drift() function" ], "created": "2023-06-16 18:39:32", "modified": "2023-09-06 17:19:51", "commits": 5 }, { "source": "a6_digging.Rmd", "filename": "a6_digging.html", "title": "Digging into your data", "engine": "knitr::rmarkdown", "headings": [ "stationchange() function", "resmax() function", "resmaxcml() function" ], "created": "2023-06-16 18:39:32", "modified": "2023-06-27 21:59:11", "commits": 2 }, { "source": "a1_data-prep.Rmd", "filename": "a1_data-prep.html", "title": "Formatting your data", "engine": "knitr::rmarkdown", "headings": [ "mort format", "Other formats", "actel", "glatos", "VTrack", "Other packages?", "Manual formatting" ], "created": "2023-06-16 18:39:32", "modified": "2023-09-01 15:46:18", "commits": 4 }, { "source": "a2_morts.Rmd", "filename": "a2_morts.html", "title": "Identifying potential mortalities", "engine": "knitr::rmarkdown", "headings": [ "morts() function", "Duration of residence events", "1. last", "2. any", "Cumulative residence events", "Notes on selecting a method", "Output", "infrequent() function", "1. recent", "2. defined", "Options", "Exclude single detections", "Previously identified mortalities", "Look backwards", "Drift and season" ], "created": "2023-06-16 18:39:32", "modified": "2023-09-06 17:19:51", "commits": 5 }, { "source": "a5_plots.Rmd", "filename": "a5_plots.html", "title": "Plotting your data", "engine": "knitr::rmarkdown", "headings": [ "Basic plotting of residence events", "Customizing", "Interactive plots", "Options", "Add flagged mortalities", "Seasonality", "Facetting", "Exclude single detections", "Source code" ], "created": "2023-06-16 18:39:32", "modified": "2023-06-27 23:03:48", "commits": 6 }, { "source": "a7_review.Rmd", "filename": "a7_review.html", "title": "Review new data", "engine": "knitr::rmarkdown", "headings": [ "Using review()", "Including previous data", "Applying drift" ], "created": "2023-06-16 18:39:32", "modified": "2024-09-04 20:20:46", "commits": 3 }, { "source": "a4_season.Rmd", "filename": "a4_season.html", "title": "Seasonality", "engine": "knitr::rmarkdown", "headings": [ "Applying seasonality", "overlap argument", "season() function" ], "created": "2023-06-16 18:39:32", "modified": "2023-06-27 22:16:33", "commits": 3 } ], "_score": 5.507855871695831, "_indexed": false, "_nocasepkg": "mort", "_universes": [ "ocean-tracking-network" ], "_indexurl": "https://rosieluain.r-universe.dev/mort", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.1", "date": "2026-06-07T06:22:44.000Z", "distro": "noble", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "02c5b0fb4f15ea71f4df32c3f7b09288f9c79b83c9c32c55fa55b2ce26e3ddc4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.6.0", "os": "linux", "version": "0.0.1", "date": "2026-06-07T06:22:56.000Z", "distro": "noble", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "7c4f5356c3bb22dd089bb5a95a9b3b92598d390d0fabf125967d9cd1e1df8229", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.5.3", "os": "mac", "version": "0.0.1", "date": "2026-06-07T06:22:16.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "4ddc61fc9643b9dce438c0010f671e468da4af1ce707933c6f9b16f356e1d9f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.6.0", "os": "mac", "version": "0.0.1", "date": "2026-06-07T06:22:02.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "94e401d849721abada0ab7c7d50f6b09477e1b2623633ed8cec202b936313973", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.1", "date": "2026-06-07T06:22:44.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "e2704c0da75edf9bc58a46fe217737bb88b09079db24a60a8461899bb304583b", "status": "success", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.7.0", "os": "win", "version": "0.0.1", "date": "2026-06-07T06:21:50.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "fae1cc8a83c76ddd5554053e85e5b64829893c67e351e08ed34ea66b0237eb97", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.5.3", "os": "win", "version": "0.0.1", "date": "2026-06-07T06:22:01.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "c4ac52e5ef1210c9edec9542b625b1f2d5478b33ec5009c2f175c9675ad6b2a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" }, { "r": "4.6.0", "os": "win", "version": "0.0.1", "date": "2026-06-07T06:21:51.000Z", "commit": "20bcaf985c59faf0ba598b3de6381836e8169519", "fileid": "eca2e6e37d950fb3e745363c41d4b4c3e4af4aebfd0a88e0b4552b0b7fc9e6b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/27084695699" } ] }