{ "_id": "6a21d157cd65a98ecbd3ef8f", "Package": "surimi", "Title": "Convert Acoustic Telemetry Data Between Institutional Formats", "Version": "0.0.0.1", "Authors@R": "c(person(given=\"Bruce\",\nfamily=\"Delo\",\nrole=c(\"aut\", \"ctb\", \"cre\"),\nemail=\"br772481@dal.ca\"))", "Description": "Surimi takes as input data files representing acoustic\ntelemetry, which may have column names and structures specific\nto particular institutions. It can convert, with minimal code\non the user's part, data from one format to another, allowing\ndata from one institution to be easily used across software\npackages that may expect different formats.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev libavfilter-dev libicu-dev libxml2-dev libssl-dev\nlibproj-dev libsqlite3-dev libudunits2-dev", "Repository": "https://ocean-tracking-network.r-universe.dev", "Date/Publication": "2026-06-04 18:33:49 UTC", "RemoteUrl": "https://github.com/ocean-tracking-network/surimi", "RemoteRef": "HEAD", "RemoteSha": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 19:23:14 UTC", "User": "root" }, "Author": "Bruce Delo [aut, ctb, cre]", "Maintainer": "Bruce Delo ", "MD5sum": "830ef7313e06e6095eb6076cfa0c80dc", "_user": "ocean-tracking-network", "_type": 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"br772481@dal.ca" }, "_registered": true, "_dependencies": [ { "package": "dplyr", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "worrms", "role": "Imports" }, { "package": "nanoparquet", "role": "Imports" }, { "package": "glatos", "role": "Imports" } ], "_owner": "ocean-tracking-network", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 3 }, { "week": "2026-11", "n": 1 }, { "week": "2026-12", "n": 2 }, { "week": "2026-17", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-22", "n": 1 }, { "week": "2026-23", "n": 2 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "jackvanish", "count": 152, "uuid": 5347501 }, { "user": "mhpob", "count": 4, "uuid": 8228205 } ], "_userbio": { "uuid": 47894657, "type": "organization", "name": "Ocean Tracking Network", "description": "The Ocean Tracking Network (OTN) is a global aquatic research, data management and partnership platform" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/surimi" }, "_devurl": "https://github.com/ocean-tracking-network/surimi", "_searchresults": 4, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/surimi.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "glatos_to_ato", "glatos_workbook_to_ato", "imos_otn_column_map", "imos_to_otn_detections", "imos_to_otn_receivers", "imos_to_otn_tags", "map_otn_file", "otn_imos_column_map", "otn_imos_new_style_column_map", "otn_to_ato", "rollup" ], "_help": [ { "page": "get_aphiaid_from_lookup", "title": "Consult a lookup table for the aphiaID.", "topics": [ "get_aphiaid_from_lookup" ] }, { "page": "get_unique_aphiaids", "title": "Get AphiaIDs for scientific names", "topics": [ "get_unique_aphiaids" ] }, { "page": "glatos_to_ato", "title": "Convert GLATOS detection data to an ATO object.", "topics": [ "glatos_to_ato" ] }, { "page": "glatos_workbook_to_ato", "title": "Convert GLATOS workbook to an ATO object.", "topics": [ "glatos_workbook_to_ato" ] }, { "page": "imos_otn_column_map", "title": "Map IMOS receiver metadata to an OTN-like format", "topics": [ "imos_otn_column_map" ] }, { "page": "imos_to_otn_detections", "title": "Map IMOS detection data to an OTN-like format", "topics": [ "imos_to_otn_detections" ] }, { "page": "imos_to_otn_receivers", "title": "Map IMOS receiver metadata to an OTN-like format", "topics": [ "imos_to_otn_receivers" ] }, { "page": "imos_to_otn_tags", "title": "Map IMOS tag metadata to an OTN-like format", "topics": [ "imos_to_otn_tags" ] }, { "page": "map_otn_file", "title": "Determine whether an input file is CSV or Parquet and pipe it into the correct mapping function. Hopefully this is all a stopgap until the typical format of OTN -> ATO and then ATO -> IMOS gets done, at which point those pipeline pieces will connect together. But for now, this will keep dependent software like Remora running.", "topics": [ "map_otn_file" ] }, { "page": "otn_imos_column_map", "title": "Map OTN-formatted data to IMOS-format", "topics": [ "otn_imos_column_map" ] }, { "page": "otn_imos_new_style_column_map", "title": "Map OTN-formatted data from our new Parquet detection extracts to IMOS-format", "topics": [ "otn_imos_new_style_column_map" ] }, { "page": "otn_to_ato", "title": "Convert OTN detection data to an ATO object.", "topics": [ "otn_to_ato" ] }, { "page": "rollup", "title": "Join output from Remora back onto its OTN detection extract.", "topics": [ "rollup" ] } ], "_readme": "https://github.com/ocean-tracking-network/surimi/raw/HEAD/README.md", "_rundeps": [ "av", "cellranger", "class", "classInt", "cli", "cpp11", "crayon", "crul", "curl", "data.table", "DBI", "dplyr", "e1071", "gdistance", "generics", "geodist", "glatos", "glue", "hms", "httpcode", "igraph", "jsonlite", "KernSmooth", "lattice", "lifecycle", "lubridate", "magrittr", "MASS", "Matrix", "mime", "nanoparquet", "pillar", "pkgconfig", "plotrix", "prettyunits", "progress", "proxy", "purrr", "R6", "raster", "Rcpp", "readxl", "rematch", "rlang", "s2", "sf", "sp", "stringi", "stringr", "terra", "tibble", "tidyr", "tidyselect", "timechange", "triebeard", "units", "urltools", "utf8", "vctrs", "withr", "wk", "worrms", "zip" ], "_score": 3.322219294733919, "_indexed": true, "_nocasepkg": "surimi", "_universes": [ "ocean-tracking-network" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.0.1", "date": "2026-06-04T19:25:29.000Z", "distro": "noble", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "b1b4f61d1c55e4cba8eccc6d1844f4f24606091e9209c3e7292ec2c991891fde", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.6.0", "os": "linux", "version": "0.0.0.1", "date": "2026-06-04T19:25:31.000Z", "distro": "noble", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "9286cf50ef26fd7bf85b1bccdabaf51729c8e1c5559831dcdb9a0ef7ed4b2692", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.5.3", "os": "mac", "version": "0.0.0.1", "date": "2026-06-04T19:25:29.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "e64425ae13af4e30d057ec71b0236ffb84030cdf8d43047860f13286b6efd9c7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.6.0", "os": "mac", "version": "0.0.0.1", "date": "2026-06-04T19:25:06.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "fc6e160f647b17a817940564f5aeb281ffdf63692b2ac557ffd1e064bc711cd2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.0.1", "date": "2026-06-04T19:25:41.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "e6feb62d436c675f031977b9223417a23210bccb5e27031c169ed98375eca534", "status": "success", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.7.0", "os": "win", "version": "0.0.0.1", "date": "2026-06-04T19:24:38.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "dfdfb40396d020a94fb57eb3eb987d3095fea24dd9f391d782b332eb360ddb15", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.5.3", "os": "win", "version": "0.0.0.1", "date": "2026-06-04T19:24:26.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "f86cf46955b41c7161caf3202240d9a1ac6c8044af6a42b8e26d7a9308b84c4e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" }, { "r": "4.6.0", "os": "win", "version": "0.0.0.1", "date": "2026-06-04T19:24:54.000Z", "commit": "7a074267899446ac6f98c9c3cb5e6e598cc60df1", "fileid": "fdc9181a1b403d175f56fd7cf625a32a8b1cc6d49cbd67be9438e38b14b7b064", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ocean-tracking-network/actions/runs/26974109176" } ] }