Package: TelemetrySpace 1.3.3

Michael OBrien

TelemetrySpace: Spatial point process and random field models for electronic tagging data

A collection of tools to fit spatial models to several types of telemetry data. Models are provided to account for the detection process when estimating individual centers of activity from acoustic telemetry data and to incorporate data from stationary test transmitters when available. Bayesian versions of models are fitted using Stan (http://mc-stan.org/). Maximum likelihood versions are fitted using Template Model Builder (https://kaskr.github.io/adcomp/index.html).

Authors:Megan Winton [aut], Michael O'Brien [cre, aut], Benjamin L. Hlina [aut]

TelemetrySpace_1.3.3.tar.gz
TelemetrySpace_1.3.3.zip(r-4.7)TelemetrySpace_1.3.3.zip(r-4.6)TelemetrySpace_1.3.3.zip(r-4.5)
TelemetrySpace_1.3.3.tgz(r-4.6-x86_64)TelemetrySpace_1.3.3.tgz(r-4.6-arm64)TelemetrySpace_1.3.3.tgz(r-4.5-x86_64)TelemetrySpace_1.3.3.tgz(r-4.5-arm64)
TelemetrySpace_1.3.3.tar.gz(r-4.7-arm64)TelemetrySpace_1.3.3.tar.gz(r-4.7-x86_64)TelemetrySpace_1.3.3.tar.gz(r-4.6-arm64)TelemetrySpace_1.3.3.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TelemetrySpace/json (API)

# Install 'TelemetrySpace' in R:
install.packages('TelemetrySpace', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/trackyverse/telemetryspace/issues

Pkgdown/docs site:https://telemetryspace.trackyverse.org

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • example_extent - Example array extent
  • fishdat - Black sea bass detection data
  • model_param_ex - Example model parameters
  • ps - Parry Sound 'sf' object
  • ps_det_example - Detection 'data.frame' for a tagged Lake Trout
  • ps_det_test_tag - Detection 'data.frame' for a test tag
  • ps_rec_loc - Parry Sound - Receiver Location
  • ps_test_tag_loc - Parry Sound - Test Tag Locations object
  • rlocs - Receiver locations from a black sea bass array
  • testdat - Stationary test transmitter data
  • testloc - Location of a stationary test transmitter placed in the black sea bass array
  • testY - Counts of detection per time steps for test tag
  • Y - Counts of detection per time steps

On CRAN:

Conda:

cpp

4.43 score 6 scripts 13 exports 67 dependencies

Last updated from:749ab23d88. Checks:2 ERROR, 10 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64ERROR547
linux-devel-x86_64OK628
source / vignettesOK824
linux-release-arm64ERROR566
linux-release-x86_64OK614
macos-release-arm64OK487
macos-release-x86_64OK815
macos-oldrel-arm64OK446
macos-oldrel-x86_64OK844
windows-develOK745
windows-releaseOK812
windows-oldrelOK802
wasm-releaseFAIL224

Exports:build_aeqdbuild_bboxbuild_countsbuild_initbuild_ntransbuild_pixel_gridbuild_rec_coordsbuild_time_binbuild_tstepCOA_StandardCOA_TagIntCOA_TimeVaryingdistf

Dependencies:abindbackportsBHcallrcheckmateclassclassIntclicpp11DBIdescdistributionaldplyre1071farvergenericsggplot2gluegridExtragtableinlineisobandKernSmoothlabelinglifecycleloolubridatemagrittrMASSmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxproxypspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolss2S7scalessfStanHeadersstringistringrtensorAtibbletidyrtidyselecttimechangeunitsutf8vctrsviridisLitewithrwk

Estimate Centers of Activity for Lake Trout Tagged with an Acoustic Transmitter
Introduction | Models | Data preparation | Receiver Locations | Detection Data | Bayesian Analysis | Priors | Model convergence | Model | Convergance and model performance | Posteriors | Plotting
Rendered fromestimate_ps_coa_vignette.Rmdusingknitr::rmarkdown

Last update: 2026-06-29
Started: 2026-06-29

Estimate activity centers from acoustic telemetry data
Introduction | Data preparation | Fit the standard COA model | Fit a COA model that allows for receiver- and time-specific detection probabilities | Fit a model that uses detections from a moored test tag to inform detection probabilities | Comparison | References
Rendered fromEstimate_COA_vignette.Rmdusingknitr::rmarkdown

Last update: 2026-06-26
Started: 2018-06-03

Full Stan code
COA Standard | Gaussian transmitter signal decay | Logistic transmitter signal decay | COA Time Varying | COA Tag-Itegrated
Rendered fromstancode.Rmdusingknitr::rmarkdown

Last update: 2026-05-21
Started: 2026-05-21