Package: actel 1.3.0.9015

Hugo Flávio

actel: Acoustic Telemetry Data Analysis

Designed for studies where animals tagged with acoustic tags are expected to move through receiver arrays. This package combines the advantages of automatic sorting and checking of animal movements with the possibility for user intervention on tags that deviate from expected behaviour. The three analysis functions (explore(), migration() and residency()) allow the users to analyse their data in a systematic way, making it easy to compare results from different studies. CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.

Authors:Hugo Flávio [aut, cre], Devon Smith [ctb]

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actel.pdf |actel.html✨
actel/json (API)
NEWS

# Install 'actel' in R:
install.packages('actel', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hugomflavio/actel/issues

Datasets:

    On CRAN:

    acoustic-telemetryfish-packagestelemetry-data

    6.49 score 26 stars 16 scripts 497 downloads 36 exports 86 dependencies

    Last updated 3 days agofrom:e1036137b7. Checks:OK: 1 NOTE: 6. Indexed: no.

    TargetResultDate
    Doc / VignettesOKNov 19 2024
    R-4.5-winNOTENov 19 2024
    R-4.5-linuxNOTENov 19 2024
    R-4.4-winNOTENov 19 2024
    R-4.4-macNOTENov 19 2024
    R-4.3-winNOTENov 19 2024
    R-4.3-macNOTENov 19 2024

    Exports:advEfficiencyblankWorkspacecompleteMatrixconvertLotekCDMAFilecreateWorkspacedataToListdistancesMatrixdualArrayCJSemptyMatrixexampleWorkspaceexploreextractCodeSpacesextractSignalsgetSpeedsgetTimesloadShapeloadSpatialmigrationplotArrayplotDetectionsplotDotplotLiveplotMovesplotRatiosplotResidencyplotSensorsplotTimespreloadreadDotrecoverLogresidencyshapeToRastersimpleCJSstationNametimesToCirculartransitionLayer

    Dependencies:base64encbitbit64bootbslibcachemcircularclicliprcolorspacecpp11crayoncurldata.tableDiagrammeRDiagrammeRsvgdigestdplyrevaluatefansifarverfastmapfasttimefontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellmvtnormnlmepillarpkgconfigplyrprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreadrreshape2rlangrmarkdownrstudioapirsvgsassscalesstringistringrsvglitesystemfontstibbletidyrtidyselecttinytextzdbutf8V8vctrsviridisLitevisNetworkvroomwithrxfunyaml

    actel-website

    Hugo Flávio

    Rendered fromactel-website.Rmdusingknitr::rmarkdownon Nov 19 2024.

    Last update: 2023-04-01
    Started: 2023-04-01

    Readme and manuals

    Help Manual

    Help pageTopics
    Calculate beta estimations for efficiencyadvEfficiency
    Create a Blank WorkspaceblankWorkspace
    Complete a Distances MatrixcompleteMatrix
    Convert Lotek CDMA log to csvconvertLotekCDMAFile
    Deprecated function.createWorkspace
    Import RData in a list formatdataToList
    Calculate Distances MatrixdistancesMatrix
    Calculate estimated last-array efficiencydualArrayCJS
    Create a Template Distances MatrixemptyMatrix
    Deploy Example DataexampleWorkspace
    Explorative Analysisexplore
    Extract Code Spaces from transmitter namesextractCodeSpaces
    Extract signals from transmitter namesextractSignals
    Extract speeds from the analysis results.getSpeeds
    Extract timestamps from the analysis results.getTimes
    DEPRECATEDloadShape
    Load Spatial FileloadSpatial
    Migration Analysismigration
    Plot simultaneous/cumulative presences at a give array or set of arraysplotArray
    Plot detections for a single tagplotDetections
    Plot DOT diagramplotDot
    Plot array live timesplotLive
    Plot moves for one ore more tagsplotMoves
    Plot global/group residencyplotRatios
    Plot residency for a single tagplotResidency
    Plot sensor data for a single tagplotSensors
    Print circular graphics for time series.plotTimes
    Load a dataset before running an analysispreload
    Read dot file or stringreadDot
    Recover latest actel crash logrecoverLog
    Residency Analysisresidency
    Load shapefile and convert to a raster object.shapeToRaster
    Analytical CJS modelsimpleCJS
    Find original station namestationName
    Convert a data frame with timestamps into a list of circular objectstimesToCircular
    Calculate Transition LayertransitionLayer