Package: actel 1.4.0.9005

Hugo Flávio

actel: Acoustic Telemetry Data Analysis

Designed for studies where animals tagged with acoustic tags are expected to move through receiver arrays. This package combines the advantages of automatic sorting and checking of animal movements with the possibility for user intervention on tags that deviate from expected behaviour. The three analysis functions (explore(), migration() and residency()) allow the users to analyse their data in a systematic way, making it easy to compare results from different studies. CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.

Authors:Hugo Flávio [aut, cre], Devon Smith [ctb]

actel_1.4.0.9005.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
actel/json (API)
NEWS

# Install 'actel' in R:
install.packages('actel', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugomflavio/actel/issues

On CRAN:

Conda:

acoustic-telemetryfish-packagestelemetry-data

6.20 score 28 stars 19 scripts 712 downloads 36 exports 82 dependencies

Last updated from:6dea6fb139. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE174
source / vignettesOK260
linux-release-x86_64NOTE215
macos-release-arm64NOTE197
macos-oldrel-arm64NOTE173
windows-develNOTE190
windows-releaseNOTE165
windows-oldrelNOTE170
wasm-releaseOK156

Exports:advEfficiencyblankWorkspacecompleteMatrixconvertLotekCDMAFilecreateWorkspacedataToListdistancesMatrixdualArrayCJSemptyMatrixexampleWorkspaceexploreextractCodeSpacesextractSignalsgetSpeedsgetTimesloadShapeloadSpatialmigrationplotArrayplotDetectionsplotDotplotLiveplotMovesplotRatiosplotResidencyplotSensorsplotTimespreloadreadDotrecoverLogresidencyshapeToRastersimpleCJSstationNametimesToCirculartransitionLayer

Dependencies:base64encbitbit64bootbslibcachemcircularclicliprcpp11crayoncurldata.tableDiagrammeRDiagrammeRsvgdigestdplyrevaluatefarverfastmapfasttimefontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMatrixmemoisemimemvtnormpillarpkgconfigplyrprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreadrreshape2rlangrmarkdownrstudioapirsvgS7sassscalesstringistringrsvglitesystemfontstextshapingtibbletidyrtidyselecttinytextzdbutf8V8vctrsviridisLitevisNetworkvroomwithrxfunyaml

actel-website

Hugo Flávio

Rendered fromactel-website.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-05
Started: 2023-04-01

Readme and manuals

Help Manual

Help pageTopics
Calculate beta estimations for efficiencyadvEfficiency
Create a Blank WorkspaceblankWorkspace
Complete a Distances MatrixcompleteMatrix
Convert Lotek CDMA log to csvconvertLotekCDMAFile
Deprecated function.createWorkspace
Import RData in a list formatdataToList
Calculate Distances MatrixdistancesMatrix
Calculate estimated last-array efficiencydualArrayCJS
Create a Template Distances MatrixemptyMatrix
Deploy Example DataexampleWorkspace
Explorative Analysisexplore
Extract Code Spaces from transmitter namesextractCodeSpaces
Extract signals from transmitter namesextractSignals
Extract speeds from the analysis results.getSpeeds
Extract timestamps from the analysis results.getTimes
DEPRECATEDloadShape
Load Spatial FileloadSpatial
Migration Analysismigration
Plot simultaneous/cumulative presences at a give array or set of arraysplotArray
Plot detections for a single tagplotDetections
Plot DOT diagramplotDot
Plot array live timesplotLive
Plot moves for one ore more tagsplotMoves
Plot global/group residencyplotRatios
Plot residency for a single tagplotResidency
Plot sensor data for a single tagplotSensors
Print circular graphics for time series.plotTimes
Load a dataset before running an analysispreload
Read dot file or stringreadDot
Recover latest actel crash logrecoverLog
Residency Analysisresidency
Load shapefile and convert to a raster object.shapeToRaster
Analytical CJS modelsimpleCJS
Find original station namestationName
Convert a data frame with timestamps into a list of circular objectstimesToCircular
Calculate Transition LayertransitionLayer