Package: RSP 2.0.0

Yuri Niella

RSP: Refined Shortest Paths

The RSP toolkit is a method for analysing the fine scale movements of aquatic animals tracked with passive acoustic telemetry in estuarine environments, that accounts for the surrounding land masses. The animal movements between detections are recreated to have occurred exclusively in water and the utilisation distribution areas are limited by the land contours, providing realistic estimations of space use.

Authors:Yuri Niella [aut, cre], Hugo Flávio [aut]

RSP_2.0.0.tar.gz
RSP_2.0.0.zip(r-4.7)RSP_2.0.0.zip(r-4.6)RSP_2.0.0.zip(r-4.5)
RSP_2.0.0.tgz(r-4.6-any)RSP_2.0.0.tgz(r-4.5-any)
RSP_2.0.0.tar.gz(r-4.7-any)RSP_2.0.0.tar.gz(r-4.6-any)
RSP_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RSP/json (API)

# Install 'RSP' in R:
install.packages('RSP', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yuriniella/rsp/issues

On CRAN:

Conda:

5.41 score 18 stars 19 scripts 186 downloads 22 exports 115 dependencies

Last updated from:3f28349755. Checks:2 ERROR, 2 OK, 5 NOTE. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR500
source / vignettesOK236
linux-release-x86_64ERROR476
macos-release-arm64NOTE356
macos-oldrel-arm64NOTE424
windows-develNOTE509
windows-releaseNOTE447
windows-oldrelNOTE510
wasm-releaseOK162

Exports:%>%addCentroidsaddRecapturesaddStationsanimateTracksconvertIMOSdynBBMMgetAreasgetAreaStepgetCentroidsgetDistancesgetDistPointgetOverlapsplotAreasplotContoursplotDensitiesplotDistancesplotOverlapsplotRasterplotTracksrunRSPsuggestSize

Dependencies:actelaskpassbase64encbitbit64bootbslibcachemcallrcircularclassclassIntclicliprcmoceancpp11crayoncurldata.tableDBIDiagrammeRDiagrammeRsvgdigestdplyre1071evaluatefarverfastmapfasttimefontawesomefsgdistancegenericsgeospheregganimateggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclelpSolvelubridatemagrittrMASSMatrixmemoisemimemovemvtnormopensslpillarpkgconfigplyrprettyunitsprocessxprogressproxypspurrrR6rappdirsrasterRColorBrewerRcppreadrreshape2rlangrmarkdownrstudioapirsvgs2S7sassscalessfspstringistringrsvglitesyssystemfontsterratextshapingtibbletidyrtidyselecttimechangetinytextransformrtweenrtzdbunitsutf8V8vctrsviridisLitevisNetworkvroomwithrwkxfunxml2yaml

Preparing the data
Index | Before we start | 1.1. Preliminary analysis of acoustic detections using actel | 1.2. Using IMOS data in your analyses | 1.3. Preparing the data from your study area using actel | 1.4. Checking the quality of the input files
Rendered froma-1_Preparing_the_data.Rmdusingknitr::rmarkdown

Last update: 2025-05-26
Started: 2020-06-05

Refining the Shortest Paths in-water
Index | 2.1. Exploring the runRSP results | 2.2. Visualizing the runRSP outputs | 2.3. Distances travelled exclusively in-water
Rendered froma-2_Refining_Shortest_paths.Rmdusingknitr::rmarkdown

Last update: 2025-05-26
Started: 2020-06-12

Calculating utilization distribution
Index | 3.1. Total dynamic Brownian Bridge Movement Model (group dBBMM) | 3.2. Fine-scale dynamic Brownian Bridge Movement Model (timeslot dBBMM) | 3.3. Calculating areas of space use | 3.3.1. Group areas | 3.3.2. Track areas
Rendered froma-3_dBBMM.Rmdusingknitr::rmarkdown

Last update: 2022-08-24
Started: 2020-06-12

Calculating overlaps
Index | 4.1. Calculating overlaps for group dBBMM | 4.2. Calculating overlaps for timeslot dBBMM | 4.2.1. Obtain overlap data from timeslot dBBMM for applying further statistical analysis | The end
Rendered froma-4_Overlaps.Rmdusingknitr::rmarkdown

Last update: 2022-08-24
Started: 2020-06-11

Calculating areas in steps
Index | 5.1. Calculating dBBMM areas and overlaps between pairs of groups in time steps
Rendered froma-5_Areas_in_steps.Rmdusingknitr::rmarkdown

Last update: 2022-08-24
Started: 2022-08-24