Package: mort 0.0.1

Rosie Smith

mort: Identifying Potential Mortalities and Expelled Tags in Aquatic Acoustic Telemetry Arrays

A toolkit for identifying potential mortalities and expelled tags in aquatic acoustic telemetry arrays. Designed for arrays with non-overlapping receivers.

Authors:Rosie Smith [aut, cre, cph], Heidi Swanson [fnd]

mort_0.0.1.tar.gz
mort_0.0.1.zip(r-4.7)mort_0.0.1.zip(r-4.6)mort_0.0.1.zip(r-4.5)
mort_0.0.1.tgz(r-4.6-any)mort_0.0.1.tgz(r-4.5-any)
mort_0.0.1.tar.gz(r-4.7-any)mort_0.0.1.tar.gz(r-4.6-any)
mort_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mort/json (API)

# Install 'mort' in R:
install.packages('mort', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rosieluain/mort/issues

Pkgdown/docs site:https://rosieluain.github.io

Datasets:
  • ddd - Sample dead drift direction dataframe
  • detections - Sample acoustic telemetry detection data
  • events - Sample residence events
  • new.data - Example of new acoustic telemetry detection data
  • seasons - Ice-free seasons

On CRAN:

Conda:

acoustic-telemetryaquaticmortality-estimation

5.51 score 4 stars 23 scripts 147 downloads 11 exports 5 dependencies

Last updated from:20bcaf985c. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK144
source / vignettesOK291
linux-release-x86_64OK158
macos-release-arm64OK96
macos-oldrel-arm64OK108
windows-develOK106
windows-releaseOK110
windows-oldrelOK116
wasm-releaseOK113

Exports:backwardsdriftinfrequentmortsmortsplotresidencesresmaxresmaxcmlreviewseasonstationchange

Dependencies:cpp11genericslubridaterlangtimechange

Review new data
Using review() | Including previous data | Applying drift
Rendered froma7_review.Rmdusingknitr::rmarkdown

Last update: 2024-09-04
Started: 2023-06-16

Dead and drifting
Specifying drift stations | Applying drift | drift() function
Rendered froma3_drift.Rmdusingknitr::rmarkdown

Last update: 2023-09-06
Started: 2023-06-16

Identifying potential mortalities
morts() function | Duration of residence events | 1. last | 2. any | Cumulative residence events | Notes on selecting a method | Output | infrequent() function | 1. recent | 2. defined | Options | Exclude single detections | Previously identified mortalities | Look backwards | Drift and season
Rendered froma2_morts.Rmdusingknitr::rmarkdown

Last update: 2023-09-06
Started: 2023-06-16

Formatting your data
mort format | Other formats | actel | glatos | VTrack | Other packages? | Manual formatting
Rendered froma1_data-prep.Rmdusingknitr::rmarkdown

Last update: 2023-09-01
Started: 2023-06-16

Plotting your data
Basic plotting of residence events | Customizing | Interactive plots | Options | Add flagged mortalities | Seasonality | Facetting | Exclude single detections | Source code
Rendered froma5_plots.Rmdusingknitr::rmarkdown

Last update: 2023-06-27
Started: 2023-06-16

Seasonality
Applying seasonality | overlap argument | season() function
Rendered froma4_season.Rmdusingknitr::rmarkdown

Last update: 2023-06-27
Started: 2023-06-16

Digging into your data
stationchange() function | resmax() function | resmaxcml() function
Rendered froma6_digging.Rmdusingknitr::rmarkdown

Last update: 2023-06-27
Started: 2023-06-16