Package: sporeg 0.1.0

Mary E. Bowers

sporeg: A package to reconstruct sporadic passive tracking data and measure the bias and uncertainty incurred through the process

This package is the corresponding code for the Methods in Ecology and Evolution article, "A novel process to infer the reliability of ecological information derived from passive acoustic telemetry track reconstruction". The intended workflow is to simulate tracks inside a specified polygon, calculate quadrat counts inside grid cells, derive passive detection data from the simulated tracks using geolocations of listening stations, reconstruct the tracks using continuous-time correlated random walk models, re-route any spurious track intersections with a specified boundary, calculate quadrat counts of reconstructed tracks within grid cells, and compare quadrat counts between simulated and reconstructed tracks. This process is designed to be iterated to achieve statistical power. The user can then proceed with modeling the relationship between environmental variables and a desirable result (i.e., a good fit) to determine what environmental variables affect the odds of a good fit in grid cells.

Authors:Mary E. Bowers [aut, cre]

sporeg_0.1.0.tar.gz
sporeg_0.1.0.zip(r-4.5)sporeg_0.1.0.zip(r-4.4)sporeg_0.1.0.zip(r-4.3)
sporeg_0.1.0.tgz(r-4.4-any)sporeg_0.1.0.tgz(r-4.3-any)
sporeg_0.1.0.tar.gz(r-4.5-noble)sporeg_0.1.0.tar.gz(r-4.4-noble)
sporeg_0.1.0.tgz(r-4.4-emscripten)sporeg_0.1.0.tgz(r-4.3-emscripten)
sporeg.pdf |sporeg.html
sporeg/json (API)

# Install 'sporeg' in R:
install.packages('sporeg', repos = c('https://ocean-tracking-network.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mebowers5/sporeg/issues

On CRAN:

4.49 score 4 stars 26 scripts 18 exports 80 dependencies

Last updated 3 months agofrom:e2cdfaca0b. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:%>%comp_trksctsd_shore_rcvsden_rcvsdepth_datadif_cogd_ftsget_orgps_chrgps_fldgrid_resmake_linepowrrcv_chrsimul_trkssub_rrtzero_var

Dependencies:avBHbootBrobdingnagcellrangerCircStatsclassclassIntclicodetoolscpp11crawlcrayondata.tableDBIdigestdoParalleldoRNGdplyre1071fansiforeachgdistancegenericsgeodistgeometriesglatosgluehmsigraphiteratorsjsonliteKernSmoothlatticelifecyclelubridatelwgeommagrittrMASSMatrixmomentuHMMmvtnormnabornumDerivpathroutrpillarpkgconfigplotrixprettyunitsprogressproxypurrrR6rasterRcppRcppArmadilloRcppEigenreadxlrematchrlangrngtoolss2sfsfheaderssfnetworksspstringistringrterratibbletidygraphtidyrtidyselecttimechangeunitsutf8vctrswithrwkzip

sporeg Intended Workflow

Rendered fromsporeg_workflow.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-08-31
Started: 2024-04-26